# Nearest Neighbor Detection for Bioconductor Packages

## Documentation for package ‘BiocNeighbors’ version 1.20.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B D E F H K Q R S V misc

BiocNeighbors-package | BiocNeighbors: Nearest Neighbor Detection for Bioconductor Packages

## -- A --

AnnoyIndex | The AnnoyIndex class
AnnoyIndex-class | The AnnoyIndex class
AnnoyIndex_path | The AnnoyIndex class
AnnoyIndex_search_mult | The AnnoyIndex class
AnnoyParam | The AnnoyParam class
AnnoyParam-class | The AnnoyParam class
AnnoyParam_directory | The AnnoyParam class
AnnoyParam_ntrees | The AnnoyParam class
AnnoyParam_search_mult | The AnnoyParam class

## -- B --

BiocNeighborIndex | The BiocNeighborIndex class
BiocNeighborIndex-class | The BiocNeighborIndex class
BiocNeighborParam | The BiocNeighborParam class
BiocNeighborParam-class | The BiocNeighborParam class
BiocNeighbors | BiocNeighbors: Nearest Neighbor Detection for Bioconductor Packages
BiocNeighbors-algorithms | Neighbor search algorithms
BiocNeighbors-raw-index | Reporting raw indices
BiocNeighbors-ties | Handling tied distances
bndata | The BiocNeighborIndex class
bndata-method | The BiocNeighborIndex class
bndistance | The BiocNeighborIndex class
bndistance-method | The BiocNeighborIndex class
bndistance-method | The BiocNeighborParam class
bnorder | The BiocNeighborIndex class
bnorder-method | The AnnoyIndex class
bnorder-method | The ExhaustiveIndex class
bnorder-method | The HnswIndex class
bnorder-method | The KmknnIndex class
bnorder-method | The VptreeIndex class
buildAnnoy | Build an Annoy index
buildExhaustive | Prepare data for an exhaustive search
buildHnsw | Build a HNSW index
buildIndex | Build a nearest-neighbor index
buildIndex-method | Build a nearest-neighbor index
buildKmknn | Pre-cluster points with k-means
buildVptree | Build a VP tree

## -- D --

dim-method | The BiocNeighborIndex class
dimnames-method | The BiocNeighborIndex class

## -- E --

ExhaustiveIndex | The ExhaustiveIndex class
ExhaustiveIndex-class | The ExhaustiveIndex class
ExhaustiveParam | The ExhaustiveParam class
ExhaustiveParam-class | The ExhaustiveParam class

## -- F --

findAnnoy | Find nearest neighbors
findExhaustive | Find nearest neighbors
findHnsw | Find nearest neighbors
findKmknn | Find nearest neighbors
findKNN | Find k-nearest neighbors
findKNN-functions | Find nearest neighbors
findKNN-method | Find k-nearest neighbors
findKNN-methods | Find k-nearest neighbors
findMutualNN | Find mutual nearest neighbors
findNeighbors | Find all neighbors in range
findNeighbors-functions | Find all neighbors in range
findNeighbors-method | Find all neighbors in range
findNeighbors-methods | Find all neighbors in range
findVptree | Find nearest neighbors

## -- H --

HnswIndex | The HnswIndex class
HnswIndex-class | The HnswIndex class
HnswIndex_ef_search | The HnswIndex class
HnswIndex_path | The HnswIndex class
HnswParam | The HnswParam class
HnswParam-class | The HnswParam class
HnswParam_directory | The HnswParam class
HnswParam_ef_construction | The HnswParam class
HnswParam_ef_search | The HnswParam class
HnswParam_nlinks | The HnswParam class

## -- K --

KmknnIndex | The KmknnIndex class
KmknnIndex-class | The KmknnIndex class
KmknnIndex_cluster_centers | The KmknnIndex class
KmknnIndex_cluster_info | The KmknnIndex class
KmknnParam | The KmknnParam class
KmknnParam-class | The KmknnParam class
KmknnParam_kmeans_args | The KmknnParam class

## -- Q --

queryAnnoy | Query nearest neighbors
queryExhaustive | Query nearest neighbors
queryHnsw | Query nearest neighbors
queryKmknn | Query nearest neighbors
queryKNN | Query k-nearest neighbors
queryKNN-functions | Query nearest neighbors
queryKNN-method | Query k-nearest neighbors
queryKNN-methods | Query k-nearest neighbors
queryNeighbors | Query all neighbors
queryNeighbors-functions | Query neighbors in range
queryNeighbors-method | Query all neighbors
queryNeighbors-methods | Query all neighbors
queryVptree | Query nearest neighbors

## -- R --

rangeFindExhaustive | Find all neighbors in range
rangeFindKmknn | Find all neighbors in range
rangeFindVptree | Find all neighbors in range
rangeQueryExhaustive | Query neighbors in range
rangeQueryKmknn | Query neighbors in range
rangeQueryVptree | Query neighbors in range

## -- S --

show-method | The AnnoyIndex class
show-method | The AnnoyParam class
show-method | The BiocNeighborIndex class
show-method | The BiocNeighborParam class
show-method | The HnswIndex class
show-method | The HnswParam class
show-method | The KmknnIndex class
show-method | The KmknnParam class

## -- V --

VptreeIndex | The VptreeIndex class
VptreeIndex-class | The VptreeIndex class
VptreeIndex_nodes | The VptreeIndex class
VptreeParam | The VptreeParam class
VptreeParam-class | The VptreeParam class

## -- misc --

[[-method | The AnnoyParam class
[[-method | The BiocNeighborIndex class
[[-method | The BiocNeighborParam class
[[-method | The HnswParam class
[[<--method | The AnnoyParam class
[[<--method | The BiocNeighborParam class
[[<--method | The HnswParam class