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rNMR functions
Description
A list of rNMR functions with brief descriptions is displayed below.
File
cf
- convert spectra to rNMR's default format
ca
- convert ASCII spectra to rNMR's default format
export
- export rNMR data tables
fc
- close an open spectrum
fo
- open a spectrum
fs
- sort files
gui
- display rNMR menus
import
- import rNMR data tables
rb
- restore backup workspace
ss
- switch to another open spectrum
wl
- load an R workspace
ws
- save an R workspace
Edit
ep
- modify rNMR's default settings
pe
- edit peak list
rd
- redo last undo
re
- edit the ROI table
se
- edit ROI summary
ud
- undo last action
Plotting
co
- display the color manipulation GUI
ct
- display the plot options GUI
ctd
- lower contours
ctu
- raise contours
da
- automatically choose plot type
dd
- refresh main spectrum
di
- draw image plot
dp
- draw 3D perspective plot
dr
- draw contour plot
drf
- draw filled contour plot
Perspective plots
per
- display the perspective plot GUI
rotc
- rotate perspective plot clockwise
rotcc
- rotate perspective plot counter clockwise
rotd
- rotate perspective plot down
rotu
- rotate perspective plot up
spin
- spin perspective plot
View
ol
- display the overlay GUI
pj
- 1D projection/slice GUI
pjv
- toggle 1D projection display
vp
- vertical position for 1D spectra, slices/projections
vpd
- decrease vertical position for 1D spectra,
slices/projections
vpu
- increase vertical position for 1D spectra,
slices/projections
vs
- view slice
Zoom
delta
- get chemical shift ranges
loc
- get chemical shifts
pd
- pan down
pl
- pan left
pr
- pan right
pu
- pan up
pz
- zoom to a point
zc
- center window on a peak
zf
- zoom full
zi
- zoom in
zm
- display the zoom GUI
zo
- zoom out
zp
- zoom previous
zz
- zoom in on a manually selected region
Tools
sr
- display custom library GUI
ed
- extract data
mmcd
- open MMCD homepage
sr
- display chemical shift referencing GUI
Peak picking
nf
- set peak picking noise filter
pa
- pick full spectrum
pDel
- clear peak list
ph
- manually pick spectrum
pm
- peak pick the maximum intensity within a region
pp
- display peak picking GUI
pReg
- peak pick a region
pv
- toggle peak display
pw
- pick current window
rp
- pick inside/outside ROIs
Batch peak picking
paAll
- pick full spectrum in all files
pDelAll
- clear all peak lists
pwAll
- pick current window in all files
rpAll
- pick inside/outside ROIs in all files
ROIs
ra
- automatically draw ROIs for window
rc
- center active ROIs
rcd
- contract active ROIs in the direct dimension
rci
- contract active ROIs in the indirect dimension
rDel
- delete ROIs
red
- expand active ROIs in the direct dimension
rei
- expand active ROIs in the indirect dimension
rmd
- move active ROIs down (downfield indirect dimension)
rml
- move active ROIs left (downfield direct dimension)
rmr
- move active ROIs right (upfield direct dimension)
rmu
- move active ROIs up (upfield indirect dimension)
rn
- create new ROIs by hand
roi
- display the ROI GUI
rr
- rename active ROIs
rs
- activate/deactivate ROIs from a list or plot window
rsf
- select files to display in the multiple file window
rsAll
- activate all ROIs
rdAll
- deactivate all ROIs
rSum
- generate ROI summary
rv
- toggle ROI display in the main plot window
rvm
- open ROI multiple file window
rvs
- open ROI subplot window
Author(s)
Ian A. Lewis ialewis@nmrfam.wisc.edu,
Seth C. Schommer schommer@nmrfam.wisc.edu
See Also
gui
for displaying rNMR menus; rNMR
for other rNMR help topics.
[Package
rNMR version 1.1.7
Index]